Shopify Payments × QuickBooks Online · Xero

Your Shopify payouts,
perfectly in the books.

One Shopify deposit hides gross sales, refunds, fees, tips and disputes. PaydayBooks decomposes every payout into the three entries your accountant actually expects — automatically, every time.

14-day free trial No credit card 5-min setup

Shopify Payout
po_1NfQk2 · Apr 28
Auto-synced
Gross sales (42 orders)
$ 4,812.50
Refunds (3)
− $ 184.20
Shopify fees
− $ 142.78
Adjustments
− $ 12.50
Net deposit
$ 4,473.02
Decomposed into
SR
Sales Receipt
Shopify Clearing · 42 line items
$ 4,812.50
RR
Refund Receipt
Shopify Clearing · 3 line items
− $ 184.20
DEP
Deposit
Clearing → Bank · less $155.28 fees
$ 4,473.02
Built for the stack you already use
S Shopify Q QuickBooks Online X Xero ¤ Multi-currency SOC 2
The reconciliation problem

Shopify deposits a number.
QuickBooks has no idea what it means.

Every Friday a lump sum lands in your bank account. Inside it: gross sales, fees, refunds, tips, adjustments, the occasional dispute. Most merchants spend hours breaking it apart — or pay a bookkeeper $200–500 a month to do it. Then tax season comes anyway.

Gross sales
$ 4,812.50
Refunds
− $ 184.20
Shopify fees
− $ 142.78
Tips collected
+ $ 28.00
Chargebacks
− $ 0.00
Adjustments
− $ 40.50
What hits your bank
$ 4,473.02
That single number is what Shopify reports to QuickBooks. Everything above it is left for you to reconstruct — or it doesn’t get booked at all.
How it works

From install to auto-reconciled, in five minutes.

No data migrations, no spreadsheets, no calling your accountant first.

01

Connect

Install PaydayBooks from the Shopify App Store. OAuth to your QuickBooks Online account in two clicks — no API keys to copy.

02

Map accounts

Tell PaydayBooks which QBO accounts to use for sales, refunds, fees, and your bank. Smart defaults get you 90% there in 60 seconds.

03

Preview

Run a dry-run on your most recent payout. See exactly what will post to QuickBooks — Sales Receipt, Refund Receipt, Deposit — before anything is written.

04

Sync

Approve and PaydayBooks picks up every new payout automatically every 6 hours. Three perfectly structured QBO entries per payout, zero effort from you.

Features

Built by people who’ve actually reconciled a Shopify month-end.

Proper double-entry accounting

Every payout creates a Sales Receipt, Refund Receipt, and Deposit — exactly the three entries a CPA expects. No journal entry workarounds, no single-sided transactions.

Smart account mapping

PaydayBooks reads your QuickBooks chart of accounts and suggests the right mapping for each bucket — sales, clearing, fees, refunds, bank. One-time setup that just works.

Multi-currency, multi-store

Sell internationally or run multiple Shopify stores? PaydayBooks handles currency conversion and lets multiple stores write to one QuickBooks company file.

Retry logic built in

If a sync fails due to a QBO outage or rate limit, PaydayBooks retries automatically with exponential backoff. You're only notified when something genuinely needs your attention.

Custom doc number prefixes

Every QBO entry is stamped with a traceable doc number (PDB-po_xxx, PDB-R-po_xxx, PDB-D-po_xxx) so you can trace any number back to the exact Shopify payout in seconds.

Health dashboard

See at a glance which payouts have synced, which are pending, and which need attention. Filter by status, date, or store. No more wondering if last night's run went through.

Who it's for

Two audiences, one boring source of truth.

For Shopify Merchants

Get your evenings back.

  • Stop manually breaking apart payouts every pay cycle
  • Stop the bookkeeper invoice creeping toward $500/mo
  • Walk into tax season with already-reconciled books
  • Multi-currency? Multi-store? Handled.
For Bookkeepers & Accountants

Take on more Shopify clients without burning out.

  • Manage multiple stores from one dashboard
  • Every entry tagged with the source payout ID — audit trail by default
  • White-glove onboarding for clients you bring
  • The same three entries you’d post manually — just instant
vs Other tools

Why merchants switch to PaydayBooks.

P PaydayBooks
Commerce Sync
Shogo
PayTraQer
Built specifically for Shopify Payments Yes Partial Aggregator Multi-platform
3-entry decomposition (SR / RR / Deposit) Yes Journal entry Journal entry Configurable
Auto-provisions Shopify accounts in QBO Yes No No No
Dry-run preview before posting Yes No No Limited
Starting price $19/mo $18–60/mo $15–30/mo $19–99/mo

Comparisons reflect publicly listed features as of April 2026. We’re happy to be wrong — email us.

Pricing

One plan. Flat $19 a month.

No per-transaction fees. No tiers. No surprise charges when you have a good month.

Most reconciliation tools price by transaction volume — punishing you for growing. We charge $19. Whether you ship 50 orders a month or 5,000, your books cost the same.

  • Bank-grade encryption · OAuth-only
  • Read-only Shopify scope, scoped QBO write
  • SOC 2 Type I in progress · GDPR-ready
14-day free trial
PaydayBooks
$19 / month, per store
Unlimited payouts · unlimited orders · cancel any time
  • Shopify Payments → QuickBooks Online or Xero
  • Auto-sync every 6 hours, with manual re-run
  • Multi-currency, multi-store from one dashboard
  • Email alerts when something needs attention
  • Email support, 1-business-day response
Start free trial

14 days free · No credit card required

Questions

The bookkeeper-grade answers.

How is this different from a Shopify-to-QuickBooks “connector”?

Most connectors post a single journal entry per payout, lumping refunds and fees together. PaydayBooks posts three discrete entries (Sales Receipt, Refund Receipt, Deposit) — the same way a senior bookkeeper would book it by hand. Your P&L breakdown stays accurate, and refunds show up as refunds.

What if I already have months of un-synced payouts?

You can backfill any historical range during onboarding. PaydayBooks dry-runs the entries first, you approve, and then it posts everything in order. We’ve backfilled stores with 18+ months of history.

Will it work if I sell in multiple currencies?

Yes. PaydayBooks records each payout in its native currency and books it correctly against your home-currency clearing accounts. The FX trail is preserved on every entry.

Is it safe to give you access to my QuickBooks?

We use OAuth — no passwords ever leave QuickBooks or Shopify. Our QBO scope is restricted to writing the entries we describe; we don’t touch payroll, customers, or anything outside the Shopify Clearing accounts. SOC 2 Type I is in progress.

Does it work with Xero?

Yes. Same three-entry model, same dashboard. Pick your platform during onboarding.

What happens at the end of the 14-day trial?

Nothing automatic. We email you on day 11 and day 14. If you do nothing, sync stops; your QBO data and entries already posted are unaffected. You can resume any time.

Ready when you are

Stop reconciling Shopify payouts by hand.

Install PaydayBooks and have your first payout decomposed into QuickBooks in under five minutes.